Walrus is a tool for interactively visualizing large directed graphs in three-dimensional space. By employing 3D hyperbolic geometry to display graphs under a fisheye-like distortion, it provides a display that simultaneously shows local de...
www.caida.org/tools/visualization/walrus/
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Gephi is an open-source software for visualizing and analysing large networks graphs. Gephi uses a 3D render engine to display graphs in real-time and speed up the exploration. Use Gephi to explore, analyse, spatialise, filter, cluterize,...